{
  "data": {
    "tool": {
      "category": "translation",
      "endpoint": "https://app.claidex.com/api/mcp",
      "jsonUrl": "https://www.anchorterminal.com/api/v1/tools/claidex-failure-intelligence.json",
      "kind": "mcp",
      "listed": "indexed",
      "liveUrl": "https://www.anchorterminal.com/api/v1/live/claidex-failure-intelligence.json",
      "markdownUrl": "https://www.anchorterminal.com/tools/claidex-failure-intelligence.md",
      "mcpTools": {
        "check": {
          "checker": "anchor-check/1.0",
          "totalTokens": 4095,
          "counts": {
            "error": 0,
            "note": 1,
            "warn": 57
          },
          "findings": [
            {
              "rule": "TC10",
              "severity": "warn",
              "tool": "claidex_claim_risk_matrix",
              "message": "\"limit\" is required and has a default",
              "fix": "Make it optional; the default says what happens when it's left out."
            },
            {
              "rule": "TC10",
              "severity": "warn",
              "tool": "claidex_research_prompt",
              "message": "\"risk_tolerance\" is required and has a default",
              "fix": "Make it optional; the default says what happens when it's left out."
            },
            {
              "rule": "TC10",
              "severity": "warn",
              "tool": "claidex_tool_catalog",
              "message": "\"include_schemas\" is required and has a default",
              "fix": "Make it optional; the default says what happens when it's left out."
            },
            {
              "rule": "TC10",
              "severity": "warn",
              "tool": "claidex_tool_catalog",
              "message": "\"source\" is required and has a default",
              "fix": "Make it optional; the default says what happens when it's left out."
            },
            {
              "rule": "TC10",
              "severity": "warn",
              "tool": "fetch_research_url",
              "message": "\"max_chars\" is required and has a default",
              "fix": "Make it optional; the default says what happens when it's left out."
            },
            {
              "rule": "TC10",
              "severity": "warn",
              "tool": "query_clinicaltrials",
              "message": "\"status\" is required and has a default",
              "fix": "Make it optional; the default says what happens when it's left out."
            },
            {
              "rule": "TC10",
              "severity": "warn",
              "tool": "query_clinicaltrials",
              "message": "\"phase\" is required and has a default",
              "fix": "Make it optional; the default says what happens when it's left out."
            },
            {
              "rule": "TC10",
              "severity": "warn",
              "tool": "query_clinicaltrials",
              "message": "\"max_results\" is required and has a default",
              "fix": "Make it optional; the default says what happens when it's left out."
            },
            {
              "rule": "TC10",
              "severity": "warn",
              "tool": "query_openfda",
              "message": "\"max_results\" is required and has a default",
              "fix": "Make it optional; the default says what happens when it's left out."
            },
            {
              "rule": "TC10",
              "severity": "warn",
              "tool": "rank_documents_by_embedding",
              "message": "\"top_k\" is required and has a default",
              "fix": "Make it optional; the default says what happens when it's left out."
            },
            {
              "rule": "TC10",
              "severity": "warn",
              "tool": "rerank_documents",
              "message": "\"top_n\" is required and has a default",
              "fix": "Make it optional; the default says what happens when it's left out."
            },
            {
              "rule": "TC10",
              "severity": "warn",
              "tool": "run_computation",
              "message": "\"variables\" is required and has a default",
              "fix": "Make it optional; the default says what happens when it's left out."
            },
            {
              "rule": "TC10",
              "severity": "warn",
              "tool": "search",
              "message": "\"limit\" is required and has a default",
              "fix": "Make it optional; the default says what happens when it's left out."
            },
            {
              "rule": "TC10",
              "severity": "warn",
              "tool": "search_claims",
              "message": "\"category\" is required and has a default",
              "fix": "Make it optional; the default says what happens when it's left out."
            },
            {
              "rule": "TC10",
              "severity": "warn",
              "tool": "search_claims",
              "message": "\"failure_archetype\" is required and has a default",
              "fix": "Make it optional; the default says what happens when it's left out."
            },
            {
              "rule": "TC10",
              "severity": "warn",
              "tool": "search_claims",
              "message": "\"limit\" is required and has a default",
              "fix": "Make it optional; the default says what happens when it's left out."
            },
            {
              "rule": "TC10",
              "severity": "warn",
              "tool": "search_preprint_flags",
              "message": "\"severity\" is required and has a default",
              "fix": "Make it optional; the default says what happens when it's left out."
            },
            {
              "rule": "TC10",
              "severity": "warn",
              "tool": "search_pubmed",
              "message": "\"max_results\" is required and has a default",
              "fix": "Make it optional; the default says what happens when it's left out."
            },
            {
              "rule": "TC10",
              "severity": "warn",
              "tool": "web_search",
              "message": "\"focus\" is required and has a default",
              "fix": "Make it optional; the default says what happens when it's left out."
            },
            {
              "rule": "TC11",
              "severity": "warn",
              "tool": "claidex_claim_risk_matrix",
              "message": "1 parameter without a description: limit",
              "fix": "Describe each one: format, units, an example, and what happens when it's left out."
            },
            {
              "rule": "TC11",
              "severity": "warn",
              "tool": "claidex_research_prompt",
              "message": "1 parameter without a description: risk_tolerance",
              "fix": "Describe each one: format, units, an example, and what happens when it's left out."
            },
            {
              "rule": "TC11",
              "severity": "warn",
              "tool": "claidex_tool_catalog",
              "message": "1 parameter without a description: source",
              "fix": "Describe each one: format, units, an example, and what happens when it's left out."
            },
            {
              "rule": "TC11",
              "severity": "warn",
              "tool": "fetch_research_url",
              "message": "1 parameter without a description: max_chars",
              "fix": "Describe each one: format, units, an example, and what happens when it's left out."
            },
            {
              "rule": "TC11",
              "severity": "warn",
              "tool": "query_clinicaltrials",
              "message": "3 parameters without a description: max_results, phase, status",
              "fix": "Describe each one: format, units, an example, and what happens when it's left out."
            },
            {
              "rule": "TC11",
              "severity": "warn",
              "tool": "query_openfda",
              "message": "1 parameter without a description: max_results",
              "fix": "Describe each one: format, units, an example, and what happens when it's left out."
            },
            {
              "rule": "TC11",
              "severity": "warn",
              "tool": "rank_documents_by_embedding",
              "message": "none of its 3 parameters has a description",
              "fix": "Describe each one: format, units, an example, and what happens when it's left out."
            },
            {
              "rule": "TC11",
              "severity": "warn",
              "tool": "rerank_documents",
              "message": "none of its 3 parameters has a description",
              "fix": "Describe each one: format, units, an example, and what happens when it's left out."
            },
            {
              "rule": "TC11",
              "severity": "warn",
              "tool": "run_statistical_analysis",
              "message": "1 parameter without a description: analysis_type",
              "fix": "Describe each one: format, units, an example, and what happens when it's left out."
            },
            {
              "rule": "TC11",
              "severity": "warn",
              "tool": "search",
              "message": "1 parameter without a description: limit",
              "fix": "Describe each one: format, units, an example, and what happens when it's left out."
            },
            {
              "rule": "TC11",
              "severity": "warn",
              "tool": "search_claims",
              "message": "3 parameters without a description: category, failure_archetype, limit",
              "fix": "Describe each one: format, units, an example, and what happens when it's left out."
            },
            {
              "rule": "TC11",
              "severity": "warn",
              "tool": "search_preprint_flags",
              "message": "1 parameter without a description: severity",
              "fix": "Describe each one: format, units, an example, and what happens when it's left out."
            },
            {
              "rule": "TC11",
              "severity": "warn",
              "tool": "search_pubmed",
              "message": "1 parameter without a description: max_results",
              "fix": "Describe each one: format, units, an example, and what happens when it's left out."
            },
            {
              "rule": "TC11",
              "severity": "warn",
              "tool": "web_search",
              "message": "1 parameter without a description: focus",
              "fix": "Describe each one: format, units, an example, and what happens when it's left out."
            },
            {
              "rule": "TC16",
              "severity": "warn",
              "tool": "claidex_capabilities",
              "message": "no readOnlyHint or destructiveHint",
              "fix": "Set readOnlyHint: true if it only reads; otherwise set destructiveHint and idempotentHint."
            },
            {
              "rule": "TC16",
              "severity": "warn",
              "tool": "claidex_claim_risk_matrix",
              "message": "no readOnlyHint or destructiveHint",
              "fix": "Set readOnlyHint: true if it only reads; otherwise set destructiveHint and idempotentHint."
            },
            {
              "rule": "TC16",
              "severity": "warn",
              "tool": "claidex_health_snapshot",
              "message": "no readOnlyHint or destructiveHint",
              "fix": "Set readOnlyHint: true if it only reads; otherwise set destructiveHint and idempotentHint."
            },
            {
              "rule": "TC16",
              "severity": "warn",
              "tool": "claidex_research_prompt",
              "message": "no readOnlyHint or destructiveHint",
              "fix": "Set readOnlyHint: true if it only reads; otherwise set destructiveHint and idempotentHint."
            },
            {
              "rule": "TC16",
              "severity": "warn",
              "tool": "claidex_tool_catalog",
              "message": "no readOnlyHint or destructiveHint",
              "fix": "Set readOnlyHint: true if it only reads; otherwise set destructiveHint and idempotentHint."
            },
            {
              "rule": "TC16",
              "severity": "warn",
              "tool": "consult_specialist_model",
              "message": "no readOnlyHint or destructiveHint",
              "fix": "Set readOnlyHint: true if it only reads; otherwise set destructiveHint and idempotentHint."
            },
            {
              "rule": "TC16",
              "severity": "warn",
              "tool": "fetch",
              "message": "no readOnlyHint or destructiveHint",
              "fix": "Its name starts with \"fetch\"; if it only reads, set readOnlyHint: true so harnesses can run it without asking."
            },
            {
              "rule": "TC16",
              "severity": "warn",
              "tool": "fetch_research_url",
              "message": "no readOnlyHint or destructiveHint",
              "fix": "Its name starts with \"fetch\"; if it only reads, set readOnlyHint: true so harnesses can run it without asking."
            },
            {
              "rule": "TC16",
              "severity": "warn",
              "tool": "get_claim_content",
              "message": "no readOnlyHint or destructiveHint",
              "fix": "Its name starts with \"get\"; if it only reads, set readOnlyHint: true so harnesses can run it without asking."
            },
            {
              "rule": "TC16",
              "severity": "warn",
              "tool": "query_chembl",
              "message": "no readOnlyHint or destructiveHint",
              "fix": "Its name starts with \"query\"; if it only reads, set readOnlyHint: true so harnesses can run it without asking."
            },
            {
              "rule": "TC16",
              "severity": "warn",
              "tool": "query_clinicaltrials",
              "message": "no readOnlyHint or destructiveHint",
              "fix": "Its name starts with \"query\"; if it only reads, set readOnlyHint: true so harnesses can run it without asking."
            },
            {
              "rule": "TC16",
              "severity": "warn",
              "tool": "query_failure_graph",
              "message": "no readOnlyHint or destructiveHint",
              "fix": "Its name starts with \"query\"; if it only reads, set readOnlyHint: true so harnesses can run it without asking."
            },
            {
              "rule": "TC16",
              "severity": "warn",
              "tool": "query_openfda",
              "message": "no readOnlyHint or destructiveHint",
              "fix": "Its name starts with \"query\"; if it only reads, set readOnlyHint: true so harnesses can run it without asking."
            },
            {
              "rule": "TC16",
              "severity": "warn",
              "tool": "query_opentargets",
              "message": "no readOnlyHint or destructiveHint",
              "fix": "Its name starts with \"query\"; if it only reads, set readOnlyHint: true so harnesses can run it without asking."
            },
            {
              "rule": "TC16",
              "severity": "warn",
              "tool": "query_package_registry",
              "message": "no readOnlyHint or destructiveHint",
              "fix": "Its name starts with \"query\"; if it only reads, set readOnlyHint: true so harnesses can run it without asking."
            },
            {
              "rule": "TC16",
              "severity": "warn",
              "tool": "rank_documents_by_embedding",
              "message": "no readOnlyHint or destructiveHint",
              "fix": "Set readOnlyHint: true if it only reads; otherwise set destructiveHint and idempotentHint."
            },
            {
              "rule": "TC16",
              "severity": "warn",
              "tool": "rerank_documents",
              "message": "no readOnlyHint or destructiveHint",
              "fix": "Set readOnlyHint: true if it only reads; otherwise set destructiveHint and idempotentHint."
            },
            {
              "rule": "TC16",
              "severity": "warn",
              "tool": "run_computation",
              "message": "no readOnlyHint or destructiveHint",
              "fix": "Set readOnlyHint: true if it only reads; otherwise set destructiveHint and idempotentHint."
            },
            {
              "rule": "TC16",
              "severity": "warn",
              "tool": "run_statistical_analysis",
              "message": "no readOnlyHint or destructiveHint",
              "fix": "Set readOnlyHint: true if it only reads; otherwise set destructiveHint and idempotentHint."
            },
            {
              "rule": "TC16",
              "severity": "warn",
              "tool": "search",
              "message": "no readOnlyHint or destructiveHint",
              "fix": "Its name starts with \"search\"; if it only reads, set readOnlyHint: true so harnesses can run it without asking."
            },
            {
              "rule": "TC16",
              "severity": "warn",
              "tool": "search_claims",
              "message": "no readOnlyHint or destructiveHint",
              "fix": "Its name starts with \"search\"; if it only reads, set readOnlyHint: true so harnesses can run it without asking."
            },
            {
              "rule": "TC16",
              "severity": "warn",
              "tool": "search_preprint_flags",
              "message": "no readOnlyHint or destructiveHint",
              "fix": "Its name starts with \"search\"; if it only reads, set readOnlyHint: true so harnesses can run it without asking."
            },
            {
              "rule": "TC16",
              "severity": "warn",
              "tool": "search_pubmed",
              "message": "no readOnlyHint or destructiveHint",
              "fix": "Its name starts with \"search\"; if it only reads, set readOnlyHint: true so harnesses can run it without asking."
            },
            {
              "rule": "TC16",
              "severity": "warn",
              "tool": "web_search",
              "message": "no readOnlyHint or destructiveHint",
              "fix": "Its name starts with \"search\"; if it only reads, set readOnlyHint: true so harnesses can run it without asking."
            },
            {
              "rule": "TC24",
              "severity": "note",
              "message": "24 of 24 tools have no outputSchema",
              "fix": "Declare outputSchema for tools that return structured data, and return structuredContent that matches it."
            }
          ]
        },
        "checkedAt": "2026-10-04T22:22:22Z",
        "count": 24,
        "note": "answered without the initialize handshake",
        "schemaTokens": 4095,
        "status": "ok",
        "tools": [
          {
            "name": "claidex_capabilities",
            "title": "Claidex MCP Capabilities",
            "description": "Return the Claidex MCP feature map, configured storage/model providers, safety controls, resources, prompts, and tool counts.",
            "inputSchema": {
              "$schema": "https://json-schema.org/draft/2020-12/schema",
              "additionalProperties": false,
              "properties": {},
              "type": "object"
            }
          },
          {
            "name": "claidex_claim_risk_matrix",
            "title": "Claidex Claim Risk Matrix",
            "description": "Search claims and summarize MRS bands, trial phases, failure archetypes, and high-risk programs for rapid diligence.",
            "inputSchema": {
              "$schema": "https://json-schema.org/draft/2020-12/schema",
              "additionalProperties": false,
              "properties": {
                "limit": {
                  "default": 10,
                  "maximum": 20,
                  "minimum": 1,
                  "type": "integer"
                },
                "query": {
                  "description": "Drug, target, disease, sponsor, or failure archetype.",
                  "minLength": 1,
                  "type": "string"
                }
              },
              "required": [
                "query",
                "limit"
              ],
              "type": "object"
            }
          },
          {
            "name": "claidex_health_snapshot",
            "title": "Claidex Health Snapshot",
            "description": "Return Sentinel metrics, coverage, graph counts, recent automation runs, MRS bands, and preprint-watch summaries.",
            "inputSchema": {
              "$schema": "https://json-schema.org/draft/2020-12/schema",
              "additionalProperties": false,
              "properties": {},
              "type": "object"
            }
          },
          {
            "name": "claidex_research_prompt",
            "title": "Claidex Research Prompt",
            "description": "Compose a rigorous, reusable investigation prompt that tells an MCP client which Claidex tools and resources to use.",
            "inputSchema": {
              "$schema": "https://json-schema.org/draft/2020-12/schema",
              "additionalProperties": false,
              "properties": {
                "disease": {
                  "description": "Optional disease area.",
                  "type": "string"
                },
                "objective": {
                  "description": "The investigation objective to turn into a reusable MCP prompt.",
                  "minLength": 1,
                  "type": "string"
                },
                "risk_tolerance": {
                  "default": "medium",
                  "enum": [
                    "low",
                    "medium",
                    "high"
                  ],
                  "type": "string"
                },
                "target_gene": {
                  "description": "Optional HGNC target symbol.",
                  "type": "string"
                }
              },
              "required": [
                "objective",
                "risk_tolerance"
              ],
              "type": "object"
            }
          },
          {
            "name": "claidex_tool_catalog",
            "title": "Claidex Tool Catalog",
            "description": "Return the complete MCP tool catalog, optionally including full input schemas and filtering native versus agent-backed tools.",
            "inputSchema": {
              "$schema": "https://json-schema.org/draft/2020-12/schema",
              "additionalProperties": false,
              "properties": {
                "include_schemas": {
                  "default": false,
                  "description": "Include full JSON Schemas in the catalog.",
                  "type": "boolean"
                },
                "source": {
                  "default": "all",
                  "enum": [
                    "all",
                    "claidex-agent",
                    "mcp-native"
                  ],
                  "type": "string"
                }
              },
              "required": [
                "include_schemas",
                "source"
              ],
              "type": "object"
            }
          },
          {
            "name": "consult_specialist_model",
            "title": "Consult Specialist Model",
            "description": "Ask a specialist Gateway model for code, database/tool-calling, statistics, literature, preprint, or mechanistic synthesis support. Use for hard subproblems, second opinions, code generation/review, or complex synthesis.",
            "inputSchema": {
              "$schema": "https://json-schema.org/draft/2020-12/schema",
              "additionalProperties": false,
              "properties": {
                "context": {
                  "description": "Relevant context, snippets, or data. Do not include secrets.",
                  "maxLength": 10000,
                  "type": "string"
                },
                "prompt": {
                  "description": "Focused task for the specialist model.",
                  "maxLength": 6000,
                  "minLength": 1,
                  "type": "string"
                },
                "task_type": {
                  "description": "Specialist routing target.",
                  "enum": [
                    "code",
                    "database",
                    "reasoning",
                    "statistics",
                    "research",
                    "literature",
                    "synthesis",
                    "preprint",
                    "general"
                  ],
                  "type": "string"
                }
              },
              "required": [
                "task_type",
                "prompt"
              ],
              "type": "object"
            }
          },
          {
            "name": "fetch",
            "title": "Fetch Claidex Result",
            "description": "Fetch a specific result returned by search. This compatibility tool supports OpenAI and ChatGPT remote MCP retrieval flows.",
            "inputSchema": {
              "$schema": "https://json-schema.org/draft/2020-12/schema",
              "additionalProperties": false,
              "properties": {
                "id": {
                  "description": "Result id returned by the search tool.",
                  "minLength": 1,
                  "type": "string"
                }
              },
              "required": [
                "id"
              ],
              "type": "object"
            }
          },
          {
            "name": "fetch_research_url",
            "title": "Fetch Research Url",
            "description": "Fetch a public HTTPS research URL, JSON API response, package metadata endpoint, documentation page, or dataset preview. Blocks private/internal hosts and truncates large responses.",
            "inputSchema": {
              "$schema": "https://json-schema.org/draft/2020-12/schema",
              "additionalProperties": false,
              "properties": {
                "max_chars": {
                  "default": 8000,
                  "maximum": 20000,
                  "minimum": 500,
                  "type": "number"
                },
                "url": {
                  "description": "Public HTTPS URL to fetch.",
                  "format": "uri",
                  "type": "string"
                }
              },
              "required": [
                "url",
                "max_chars"
              ],
              "type": "object"
            }
          },
          {
            "name": "get_claim_content",
            "title": "Get Claim Content",
            "description": "Retrieve the complete text content of a specific Claidex Claim by its slug. Use this when you need to read the full post-mortem analysis, including hypothesis, failure mechanism, and prevention analysis.",
            "inputSchema": {
              "$schema": "https://json-schema.org/draft/2020-12/schema",
              "additionalProperties": false,
              "properties": {
                "slug": {
                  "description": "The Claidex claim slug, e.g. exicorilant-mcrpc-gr-bypass-fourth-failure",
                  "minLength": 1,
                  "type": "string"
                }
              },
              "required": [
                "slug"
              ],
              "type": "object"
            }
          },
          {
            "name": "query_chembl",
            "title": "Query Chembl",
            "description": "Look up a drug or compound in ChEMBL. Returns mechanism of action, primary target, ChEMBL ID, max development phase, molecular type, and synonyms.",
            "inputSchema": {
              "$schema": "https://json-schema.org/draft/2020-12/schema",
              "additionalProperties": false,
              "properties": {
                "drug_name": {
                  "description": "Drug or compound name",
                  "minLength": 1,
                  "type": "string"
                }
              },
              "required": [
                "drug_name"
              ],
              "type": "object"
            }
          },
          {
            "name": "query_clinicaltrials",
            "title": "Query Clinicaltrials",
            "description": "Search ClinicalTrials.gov for clinical trials. Can search by drug name, condition, target, or NCT ID. Returns trial status, phase, sponsor, primary endpoints, and why_stopped if terminated.",
            "inputSchema": {
              "$schema": "https://json-schema.org/draft/2020-12/schema",
              "additionalProperties": false,
              "properties": {
                "max_results": {
                  "default": 5,
                  "maximum": 10,
                  "minimum": 1,
                  "type": "number"
                },
                "phase": {
                  "default": "any",
                  "enum": [
                    "PHASE1",
                    "PHASE2",
                    "PHASE3",
                    "PHASE4",
                    "any"
                  ],
                  "type": "string"
                },
                "query": {
                  "description": "Search term: drug name, condition, NCT ID, or target",
                  "minLength": 1,
                  "type": "string"
                },
                "status": {
                  "default": "any",
                  "enum": [
                    "RECRUITING",
                    "ACTIVE_NOT_RECRUITING",
                    "TERMINATED",
                    "WITHDRAWN",
                    "COMPLETED",
                    "any"
                  ],
                  "type": "string"
                }
              },
              "required": [
                "query",
                "status",
                "phase",
                "max_results"
              ],
              "type": "object"
            }
          },
          {
            "name": "query_failure_graph",
            "title": "Query Failure Graph",
            "description": "Query the Claidex failure graph for a specific gene target. Returns the Mechanism Risk Score (MRS), failure counts by phase and archetype, and all related claim slugs.",
            "inputSchema": {
              "$schema": "https://json-schema.org/draft/2020-12/schema",
              "additionalProperties": false,
              "properties": {
                "target_gene": {
                  "description": "HGNC gene symbol, e.g. PIK3CA, KRAS, EGFR",
                  "minLength": 1,
                  "type": "string"
                }
              },
              "required": [
                "target_gene"
              ],
              "type": "object"
            }
          },
          {
            "name": "query_openfda",
            "title": "Query Openfda",
            "description": "Query the FDA FAERS database for adverse event signals for a drug. Returns top adverse event terms, serious case count, and death count.",
            "inputSchema": {
              "$schema": "https://json-schema.org/draft/2020-12/schema",
              "additionalProperties": false,
              "properties": {
                "drug_name": {
                  "description": "Drug name as it appears in FAERS",
                  "minLength": 1,
                  "type": "string"
                },
                "max_results": {
                  "default": 10,
                  "maximum": 20,
                  "minimum": 1,
                  "type": "number"
                }
              },
              "required": [
                "drug_name",
                "max_results"
              ],
              "type": "object"
            }
          },
          {
            "name": "query_opentargets",
            "title": "Query Opentargets",
            "description": "Query Open Targets for target-disease association evidence. Returns genetic evidence score, clinical evidence, known drugs, tractability, and safety liabilities for a gene-disease pair.",
            "inputSchema": {
              "$schema": "https://json-schema.org/draft/2020-12/schema",
              "additionalProperties": false,
              "properties": {
                "disease_term": {
                  "description": "Disease name or EFO term",
                  "minLength": 1,
                  "type": "string"
                },
                "target_gene": {
                  "description": "HGNC gene symbol",
                  "minLength": 1,
                  "type": "string"
                }
              },
              "required": [
                "target_gene",
                "disease_term"
              ],
              "type": "object"
            }
          },
          {
            "name": "query_package_registry",
            "title": "Query Package Registry",
            "description": "Look up package metadata from npm or PyPI before recommending code, analysis packages, API clients, or dataset tooling.",
            "inputSchema": {
              "$schema": "https://json-schema.org/draft/2020-12/schema",
              "additionalProperties": false,
              "properties": {
                "ecosystem": {
                  "description": "Package registry to query.",
                  "enum": [
                    "npm",
                    "pypi"
                  ],
                  "type": "string"
                },
                "package_name": {
                  "description": "Package name.",
                  "maxLength": 120,
                  "minLength": 1,
                  "type": "string"
                }
              },
              "required": [
                "ecosystem",
                "package_name"
              ],
              "type": "object"
            }
          },
          {
            "name": "rank_documents_by_embedding",
            "title": "Rank Documents By Embedding",
            "description": "Embed a query and candidate documents, then rank documents by cosine similarity. Use for semantic matching, retrieval checks, clustering triage, and lightweight RAG over user-provided passages.",
            "inputSchema": {
              "$schema": "https://json-schema.org/draft/2020-12/schema",
              "additionalProperties": false,
              "properties": {
                "documents": {
                  "items": {
                    "maxLength": 8000,
                    "minLength": 1,
                    "type": "string"
                  },
                  "maxItems": 30,
                  "minItems": 1,
                  "type": "array"
                },
                "query": {
                  "maxLength": 4000,
                  "minLength": 1,
                  "type": "string"
                },
                "top_k": {
                  "default": 10,
                  "maximum": 20,
                  "minimum": 1,
                  "type": "number"
                }
              },
              "required": [
                "query",
                "documents",
                "top_k"
              ],
              "type": "object"
            }
          },
          {
            "name": "rerank_documents",
            "title": "Rerank Documents",
            "description": "Rerank candidate documents/passages against a query using a dedicated reranking model. Use after retrieval/search when exact relevance ordering matters.",
            "inputSchema": {
              "$schema": "https://json-schema.org/draft/2020-12/schema",
              "additionalProperties": false,
              "properties": {
                "documents": {
                  "items": {
                    "maxLength": 8000,
                    "minLength": 1,
                    "type": "string"
                  },
                  "maxItems": 50,
                  "minItems": 1,
                  "type": "array"
                },
                "query": {
                  "maxLength": 4000,
                  "minLength": 1,
                  "type": "string"
                },
                "top_n": {
                  "default": 10,
                  "maximum": 20,
                  "minimum": 1,
                  "type": "number"
                }
              },
              "required": [
                "query",
                "documents",
                "top_n"
              ],
              "type": "object"
            }
          },
          {
            "name": "run_computation",
            "title": "Run Computation",
            "description": "Evaluate deterministic mathematical expressions with optional variables. Use for algebra, matrices, vectors, transformations, descriptive numerical checks, and reproducible calculations. Does not execute arbitrary JavaScript or install packages.",
            "inputSchema": {
              "$schema": "https://json-schema.org/draft/2020-12/schema",
              "additionalProperties": false,
              "properties": {
                "expression": {
                  "description": "MathJS expression, e.g. mean(values), std(values), multiply(A, b), inv(A).",
                  "maxLength": 4000,
                  "minLength": 1,
                  "type": "string"
                },
                "variables": {
                  "additionalProperties": {
                    "anyOf": [
                      {
                        "type": "number"
                      },
                      {
                        "type": "string"
                      },
                      {
                        "items": {
                          "type": "number"
                        },
                        "type": "array"
                      },
                      {
                        "items": {
                          "items": {
                            "type": "number"
                          },
                          "type": "array"
                        },
                        "type": "array"
                      }
                    ]
                  },
                  "default": {},
                  "description": "Variables available to the expression. Values must be numbers, strings, vectors, or matrices.",
                  "propertyNames": {
                    "type": "string"
                  },
                  "type": "object"
                }
              },
              "required": [
                "expression",
                "variables"
              ],
              "type": "object"
            }
          },
          {
            "name": "run_statistical_analysis",
            "title": "Run Statistical Analysis",
            "description": "Run a statistical analysis computation. Supports: Wilson confidence intervals, binomial proportions, phase transition success rates, power calculations, Bayesian posterior estimates, descriptive statistics, and two-proportion comparisons. Returns computed values, interpretation, and LaTeX formula.",
            "inputSchema": {
              "$schema": "https://json-schema.org/draft/2020-12/schema",
              "additionalProperties": false,
              "properties": {
                "analysis_type": {
                  "enum": [
                    "wilson_ci",
                    "phase_transition_rate",
                    "power_calculation",
                    "bayesian_posterior",
                    "descriptive_stats",
                    "failure_rate_comparison"
                  ],
                  "type": "string"
                },
                "context": {
                  "description": "Optional context about what this analysis is for",
                  "type": "string"
                },
                "inputs": {
                  "additionalProperties": {
                    "anyOf": [
                      {
                        "type": "number"
                      },
                      {
                        "type": "string"
                      },
                      {
                        "items": {
                          "type": "number"
                        },
                        "type": "array"
                      }
                    ]
                  },
                  "description": "Named input parameters. wilson_ci: {successes, n, confidence}. phase_transition_rate: {phase, indication, n_succeeded, n_total}. power_calculation: {n, effect_size, alpha}. bayesian_posterior: {prior_success_rate, n_observed, n_success, prior_strength?}. descriptive_stats: {values: number[]}. failure_rate_comparison: {a_success, a_n, b_success, b_n}.",
                  "propertyNames": {
                    "type": "string"
                  },
                  "type": "object"
                }
              },
              "required": [
                "analysis_type",
                "inputs"
              ],
              "type": "object"
            }
          },
          {
            "name": "search",
            "title": "Search Claidex",
            "description": "Search Claidex failure claims and preprint flags. This compatibility tool returns citation-ready results for OpenAI and ChatGPT remote MCP flows.",
            "inputSchema": {
              "$schema": "https://json-schema.org/draft/2020-12/schema",
              "additionalProperties": false,
              "properties": {
                "limit": {
                  "default": 8,
                  "maximum": 10,
                  "minimum": 1,
                  "type": "integer"
                },
                "query": {
                  "description": "Biomedical failure intelligence query.",
                  "minLength": 1,
                  "type": "string"
                }
              },
              "required": [
                "query",
                "limit"
              ],
              "type": "object"
            }
          },
          {
            "name": "search_claims",
            "title": "Search Claims",
            "description": "Search the Claidex failure database for post-mortems matching a drug name, gene target, disease, failure archetype, or sponsor. Returns matching claims with title, slug, drug, target, disease, phase, failure archetype, Open Targets score, and MRS score.",
            "inputSchema": {
              "$schema": "https://json-schema.org/draft/2020-12/schema",
              "additionalProperties": false,
              "properties": {
                "category": {
                  "default": "any",
                  "enum": [
                    "Oncology",
                    "Cardiology",
                    "Neurology",
                    "Immunology",
                    "Infectious Disease",
                    "Metabolic",
                    "Rare Disease",
                    "Other",
                    "any"
                  ],
                  "type": "string"
                },
                "failure_archetype": {
                  "default": "any",
                  "enum": [
                    "efficacy_failure",
                    "safety_signal",
                    "enrollment_collapse",
                    "sponsor_decision",
                    "strategic_reprioritization",
                    "translational_mismatch",
                    "biomarker_failure",
                    "any"
                  ],
                  "type": "string"
                },
                "limit": {
                  "default": 10,
                  "maximum": 20,
                  "minimum": 1,
                  "type": "number"
                },
                "query": {
                  "description": "Search term: drug name, gene symbol, disease, or failure archetype",
                  "minLength": 1,
                  "type": "string"
                }
              },
              "required": [
                "query",
                "category",
                "failure_archetype",
                "limit"
              ],
              "type": "object"
            }
          },
          {
            "name": "search_preprint_flags",
            "title": "Search Preprint Flags",
            "description": "Search the Claidex Preprint Watch database for bioRxiv preprints flagged as contradicting the clinical failure record. Search by target gene, disease, or preprint title.",
            "inputSchema": {
              "$schema": "https://json-schema.org/draft/2020-12/schema",
              "additionalProperties": false,
              "properties": {
                "query": {
                  "description": "Search term: gene symbol, disease, or preprint title fragment",
                  "minLength": 1,
                  "type": "string"
                },
                "severity": {
                  "default": "any",
                  "enum": [
                    "STRONG",
                    "MODERATE",
                    "MILD",
                    "any"
                  ],
                  "type": "string"
                }
              },
              "required": [
                "query",
                "severity"
              ],
              "type": "object"
            }
          },
          {
            "name": "search_pubmed",
            "title": "Search Pubmed",
            "description": "Search PubMed for biomedical literature. Returns title, authors, journal, year, DOI, abstract, and PMID for each result.",
            "inputSchema": {
              "$schema": "https://json-schema.org/draft/2020-12/schema",
              "additionalProperties": false,
              "properties": {
                "max_results": {
                  "default": 5,
                  "maximum": 10,
                  "minimum": 1,
                  "type": "number"
                },
                "query": {
                  "description": "PubMed search query",
                  "minLength": 1,
                  "type": "string"
                }
              },
              "required": [
                "query",
                "max_results"
              ],
              "type": "object"
            }
          },
          {
            "name": "web_search",
            "title": "Web Search",
            "description": "Search the web for recent news, investor commentary, analyst notes, press releases, and conference coverage about drugs, clinical trials, or biomedical mechanisms.",
            "inputSchema": {
              "$schema": "https://json-schema.org/draft/2020-12/schema",
              "additionalProperties": false,
              "properties": {
                "focus": {
                  "default": "any",
                  "enum": [
                    "news",
                    "academic",
                    "investor",
                    "any"
                  ],
                  "type": "string"
                },
                "query": {
                  "description": "Search query",
                  "minLength": 1,
                  "type": "string"
                }
              },
              "required": [
                "query",
                "focus"
              ],
              "type": "object"
            }
          }
        ]
      },
      "name": "Claidex MCP",
      "note": "Indexed from the official MCP registry: facts and our own checks, not reviewed, so no score, grade or rank.",
      "packages": [
        {
          "registryType": "npm",
          "identifier": "@claidex-mcp/claidex-mcp",
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          "type": "streamable-http",
          "url": "https://app.claidex.com/api/mcp"
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      "repository": "https://github.com/ssatanis/claidex-sentinel",
      "reviewed": false,
      "slug": "claidex-failure-intelligence",
      "source": "the official MCP registry",
      "sourceUrl": "https://registry.modelcontextprotocol.io/v0.1/servers?search=com.claidex/failure-intelligence",
      "summary": "Biomedical failure intelligence platform for terminated trials and translational analysis.",
      "updatedAt": "2026-05-24T20:01:49Z",
      "url": "https://www.anchorterminal.com/tools/claidex-failure-intelligence",
      "vendor": "claidex.com",
      "vendorUrl": "https://claidex.com",
      "version": "1.0.0",
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  "markdown": "# Claidex MCP\n\n\u003e Indexed, not reviewed: facts from the official MCP registry and our own checks. No score, grade or rank, and not in the rankings until the panel reviews it. How the index works: https://www.anchorterminal.com/indexed/\n\n- Kind: MCP server, by claidex.com (https://claidex.com)\n- Category: Translation (https://www.anchorterminal.com/categories/translation.md)\n- Listed because: It's published in the registry under claidex.com, a namespace the registry only gives to whoever proves they control that domain.\n- What the official MCP registry says: Biomedical failure intelligence platform for terminated trials and translational analysis.\n\n## Facts\n\n- MCP registry: `com.claidex/failure-intelligence` 1.0.0\n- Endpoint: https://app.claidex.com/api/mcp (streamable HTTP)\n- Package: npm `@claidex-mcp/claidex-mcp` (stdio)\n- Source: https://github.com/ssatanis/claidex-sentinel\n- Website: https://claidex.com\n- npm downloads a week: 16\n- Registry entry updated: 2026-05-24\n\n## Tools\n\n- Tools it lists (24, about 4,095 tokens of context, `tools/list` without credentials, checked 2026-10-04 22:22 UTC):\n  - `claidex_capabilities`: Return the Claidex MCP feature map, configured storage/model providers, safety controls, resources, prompts, and tool counts.\n  - `claidex_claim_risk_matrix`: Search claims and summarize MRS bands, trial phases, failure archetypes, and high-risk programs for rapid diligence.\n  - `claidex_health_snapshot`: Return Sentinel metrics, coverage, graph counts, recent automation runs, MRS bands, and preprint-watch summaries.\n  - `claidex_research_prompt`: Compose a rigorous, reusable investigation prompt that tells an MCP client which Claidex tools and resources to use.\n  - `claidex_tool_catalog`: Return the complete MCP tool catalog, optionally including full input schemas and filtering native versus agent-backed tools.\n  - `consult_specialist_model`: Ask a specialist Gateway model for code, database/tool-calling, statistics, literature, preprint, or mechanistic synthesis support. Use for hard subproblems,…\n  - `fetch`: Fetch a specific result returned by search. This compatibility tool supports OpenAI and ChatGPT remote MCP retrieval flows.\n  - `fetch_research_url`: Fetch a public HTTPS research URL, JSON API response, package metadata endpoint, documentation page, or dataset preview. Blocks private/internal hosts and…\n  - `get_claim_content`: Retrieve the complete text content of a specific Claidex Claim by its slug. Use this when you need to read the full post-mortem analysis, including hypothesis,…\n  - `query_chembl`: Look up a drug or compound in ChEMBL. Returns mechanism of action, primary target, ChEMBL ID, max development phase, molecular type, and synonyms.\n  - `query_clinicaltrials`: Search ClinicalTrials.gov for clinical trials. Can search by drug name, condition, target, or NCT ID. Returns trial status, phase, sponsor, primary endpoints,…\n  - `query_failure_graph`: Query the Claidex failure graph for a specific gene target. Returns the Mechanism Risk Score (MRS), failure counts by phase and archetype, and all related…\n  - `query_openfda`: Query the FDA FAERS database for adverse event signals for a drug. Returns top adverse event terms, serious case count, and death count.\n  - `query_opentargets`: Query Open Targets for target-disease association evidence. Returns genetic evidence score, clinical evidence, known drugs, tractability, and safety…\n  - `query_package_registry`: Look up package metadata from npm or PyPI before recommending code, analysis packages, API clients, or dataset tooling.\n  - `rank_documents_by_embedding`: Embed a query and candidate documents, then rank documents by cosine similarity. Use for semantic matching, retrieval checks, clustering triage, and…\n  - `rerank_documents`: Rerank candidate documents/passages against a query using a dedicated reranking model. Use after retrieval/search when exact relevance ordering matters.\n  - `run_computation`: Evaluate deterministic mathematical expressions with optional variables. Use for algebra, matrices, vectors, transformations, descriptive numerical checks, and…\n  - `run_statistical_analysis`: Run a statistical analysis computation. Supports: Wilson confidence intervals, binomial proportions, phase transition success rates, power calculations,…\n  - `search`: Search Claidex failure claims and preprint flags. This compatibility tool returns citation-ready results for OpenAI and ChatGPT remote MCP flows.\n  - `search_claims`: Search the Claidex failure database for post-mortems matching a drug name, gene target, disease, failure archetype, or sponsor. Returns matching claims with…\n  - `search_preprint_flags`: Search the Claidex Preprint Watch database for bioRxiv preprints flagged as contradicting the clinical failure record. Search by target gene, disease, or…\n  - `search_pubmed`: Search PubMed for biomedical literature. Returns title, authors, journal, year, DOI, abstract, and PMID for each result.\n  - `web_search`: Search the web for recent news, investor commentary, analyst notes, press releases, and conference coverage about drugs, clinical trials, or biomedical…\n- How its tools read to an agent (0 errors, 57 warnings, 1 note, about 4,095 tokens; rules at https://www.anchorterminal.com/check.md; not part of the score):\n  - warn TC10 claidex_claim_risk_matrix: \"limit\" is required and has a default\n  - warn TC10 claidex_research_prompt: \"risk_tolerance\" is required and has a default\n  - warn TC10 claidex_tool_catalog: \"include_schemas\" is required and has a default\n  - warn TC10 claidex_tool_catalog: \"source\" is required and has a default\n  - warn TC10 fetch_research_url: \"max_chars\" is required and has a default\n  - warn TC10 query_clinicaltrials: \"status\" is required and has a default\n  - warn TC10 query_clinicaltrials: \"phase\" is required and has a default\n  - warn TC10 query_clinicaltrials: \"max_results\" is required and has a default\n  - warn TC10 query_openfda: \"max_results\" is required and has a default\n  - warn TC10 rank_documents_by_embedding: \"top_k\" is required and has a default\n  - warn TC10 rerank_documents: \"top_n\" is required and has a default\n  - warn TC10 run_computation: \"variables\" is required and has a default\n  - warn TC10 search: \"limit\" is required and has a default\n  - warn TC10 search_claims: \"category\" is required and has a default\n  - warn TC10 search_claims: \"failure_archetype\" is required and has a default\n  - warn TC10 search_claims: \"limit\" is required and has a default\n  - warn TC10 search_preprint_flags: \"severity\" is required and has a default\n  - warn TC10 search_pubmed: \"max_results\" is required and has a default\n  - warn TC10 web_search: \"focus\" is required and has a default\n  - warn TC11 claidex_claim_risk_matrix: 1 parameter without a description: limit\n  - warn TC11 claidex_research_prompt: 1 parameter without a description: risk_tolerance\n  - warn TC11 claidex_tool_catalog: 1 parameter without a description: source\n  - warn TC11 fetch_research_url: 1 parameter without a description: max_chars\n  - warn TC11 query_clinicaltrials: 3 parameters without a description: max_results, phase, status\n\n- JSON: https://www.anchorterminal.com/api/v1/tools/claidex-failure-intelligence.json\n- Being indexed says nothing about quality, and nobody can pay for it. Ask for a review: https://www.anchorterminal.com/builders/#claiming\n",
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    "run": "2026-10-01",
    "runLabel": "October 2026 research run"
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