{
  "meta": {
    "attribution": "Anchor Terminal (https://www.anchorterminal.com)",
    "docs": "https://www.anchorterminal.com/docs/",
    "generatedAt": "2026-10-05",
    "license": "CC-BY-4.0",
    "method": "https://www.anchorterminal.com/benchmark/",
    "methodology": "0.3",
    "openapi": "https://www.anchorterminal.com/openapi.json",
    "preview": false,
    "run": "2026-10-01",
    "runLabel": "October 2026 research run"
  },
  "tool": {
    "category": "translation",
    "endpoint": "https://app.claidex.com/api/mcp",
    "jsonUrl": "https://www.anchorterminal.com/api/v1/tools/claidex-failure-intelligence.json",
    "kind": "mcp",
    "listed": "indexed",
    "liveUrl": "https://www.anchorterminal.com/api/v1/live/claidex-failure-intelligence.json",
    "markdownUrl": "https://www.anchorterminal.com/tools/claidex-failure-intelligence.md",
    "mcpTools": {
      "check": {
        "checker": "anchor-check/1.0",
        "totalTokens": 4095,
        "counts": {
          "error": 0,
          "note": 1,
          "warn": 57
        },
        "findings": [
          {
            "rule": "TC10",
            "severity": "warn",
            "tool": "claidex_claim_risk_matrix",
            "message": "\"limit\" is required and has a default",
            "fix": "Make it optional; the default says what happens when it's left out."
          },
          {
            "rule": "TC10",
            "severity": "warn",
            "tool": "claidex_research_prompt",
            "message": "\"risk_tolerance\" is required and has a default",
            "fix": "Make it optional; the default says what happens when it's left out."
          },
          {
            "rule": "TC10",
            "severity": "warn",
            "tool": "claidex_tool_catalog",
            "message": "\"include_schemas\" is required and has a default",
            "fix": "Make it optional; the default says what happens when it's left out."
          },
          {
            "rule": "TC10",
            "severity": "warn",
            "tool": "claidex_tool_catalog",
            "message": "\"source\" is required and has a default",
            "fix": "Make it optional; the default says what happens when it's left out."
          },
          {
            "rule": "TC10",
            "severity": "warn",
            "tool": "fetch_research_url",
            "message": "\"max_chars\" is required and has a default",
            "fix": "Make it optional; the default says what happens when it's left out."
          },
          {
            "rule": "TC10",
            "severity": "warn",
            "tool": "query_clinicaltrials",
            "message": "\"status\" is required and has a default",
            "fix": "Make it optional; the default says what happens when it's left out."
          },
          {
            "rule": "TC10",
            "severity": "warn",
            "tool": "query_clinicaltrials",
            "message": "\"phase\" is required and has a default",
            "fix": "Make it optional; the default says what happens when it's left out."
          },
          {
            "rule": "TC10",
            "severity": "warn",
            "tool": "query_clinicaltrials",
            "message": "\"max_results\" is required and has a default",
            "fix": "Make it optional; the default says what happens when it's left out."
          },
          {
            "rule": "TC10",
            "severity": "warn",
            "tool": "query_openfda",
            "message": "\"max_results\" is required and has a default",
            "fix": "Make it optional; the default says what happens when it's left out."
          },
          {
            "rule": "TC10",
            "severity": "warn",
            "tool": "rank_documents_by_embedding",
            "message": "\"top_k\" is required and has a default",
            "fix": "Make it optional; the default says what happens when it's left out."
          },
          {
            "rule": "TC10",
            "severity": "warn",
            "tool": "rerank_documents",
            "message": "\"top_n\" is required and has a default",
            "fix": "Make it optional; the default says what happens when it's left out."
          },
          {
            "rule": "TC10",
            "severity": "warn",
            "tool": "run_computation",
            "message": "\"variables\" is required and has a default",
            "fix": "Make it optional; the default says what happens when it's left out."
          },
          {
            "rule": "TC10",
            "severity": "warn",
            "tool": "search",
            "message": "\"limit\" is required and has a default",
            "fix": "Make it optional; the default says what happens when it's left out."
          },
          {
            "rule": "TC10",
            "severity": "warn",
            "tool": "search_claims",
            "message": "\"category\" is required and has a default",
            "fix": "Make it optional; the default says what happens when it's left out."
          },
          {
            "rule": "TC10",
            "severity": "warn",
            "tool": "search_claims",
            "message": "\"failure_archetype\" is required and has a default",
            "fix": "Make it optional; the default says what happens when it's left out."
          },
          {
            "rule": "TC10",
            "severity": "warn",
            "tool": "search_claims",
            "message": "\"limit\" is required and has a default",
            "fix": "Make it optional; the default says what happens when it's left out."
          },
          {
            "rule": "TC10",
            "severity": "warn",
            "tool": "search_preprint_flags",
            "message": "\"severity\" is required and has a default",
            "fix": "Make it optional; the default says what happens when it's left out."
          },
          {
            "rule": "TC10",
            "severity": "warn",
            "tool": "search_pubmed",
            "message": "\"max_results\" is required and has a default",
            "fix": "Make it optional; the default says what happens when it's left out."
          },
          {
            "rule": "TC10",
            "severity": "warn",
            "tool": "web_search",
            "message": "\"focus\" is required and has a default",
            "fix": "Make it optional; the default says what happens when it's left out."
          },
          {
            "rule": "TC11",
            "severity": "warn",
            "tool": "claidex_claim_risk_matrix",
            "message": "1 parameter without a description: limit",
            "fix": "Describe each one: format, units, an example, and what happens when it's left out."
          },
          {
            "rule": "TC11",
            "severity": "warn",
            "tool": "claidex_research_prompt",
            "message": "1 parameter without a description: risk_tolerance",
            "fix": "Describe each one: format, units, an example, and what happens when it's left out."
          },
          {
            "rule": "TC11",
            "severity": "warn",
            "tool": "claidex_tool_catalog",
            "message": "1 parameter without a description: source",
            "fix": "Describe each one: format, units, an example, and what happens when it's left out."
          },
          {
            "rule": "TC11",
            "severity": "warn",
            "tool": "fetch_research_url",
            "message": "1 parameter without a description: max_chars",
            "fix": "Describe each one: format, units, an example, and what happens when it's left out."
          },
          {
            "rule": "TC11",
            "severity": "warn",
            "tool": "query_clinicaltrials",
            "message": "3 parameters without a description: max_results, phase, status",
            "fix": "Describe each one: format, units, an example, and what happens when it's left out."
          },
          {
            "rule": "TC11",
            "severity": "warn",
            "tool": "query_openfda",
            "message": "1 parameter without a description: max_results",
            "fix": "Describe each one: format, units, an example, and what happens when it's left out."
          },
          {
            "rule": "TC11",
            "severity": "warn",
            "tool": "rank_documents_by_embedding",
            "message": "none of its 3 parameters has a description",
            "fix": "Describe each one: format, units, an example, and what happens when it's left out."
          },
          {
            "rule": "TC11",
            "severity": "warn",
            "tool": "rerank_documents",
            "message": "none of its 3 parameters has a description",
            "fix": "Describe each one: format, units, an example, and what happens when it's left out."
          },
          {
            "rule": "TC11",
            "severity": "warn",
            "tool": "run_statistical_analysis",
            "message": "1 parameter without a description: analysis_type",
            "fix": "Describe each one: format, units, an example, and what happens when it's left out."
          },
          {
            "rule": "TC11",
            "severity": "warn",
            "tool": "search",
            "message": "1 parameter without a description: limit",
            "fix": "Describe each one: format, units, an example, and what happens when it's left out."
          },
          {
            "rule": "TC11",
            "severity": "warn",
            "tool": "search_claims",
            "message": "3 parameters without a description: category, failure_archetype, limit",
            "fix": "Describe each one: format, units, an example, and what happens when it's left out."
          },
          {
            "rule": "TC11",
            "severity": "warn",
            "tool": "search_preprint_flags",
            "message": "1 parameter without a description: severity",
            "fix": "Describe each one: format, units, an example, and what happens when it's left out."
          },
          {
            "rule": "TC11",
            "severity": "warn",
            "tool": "search_pubmed",
            "message": "1 parameter without a description: max_results",
            "fix": "Describe each one: format, units, an example, and what happens when it's left out."
          },
          {
            "rule": "TC11",
            "severity": "warn",
            "tool": "web_search",
            "message": "1 parameter without a description: focus",
            "fix": "Describe each one: format, units, an example, and what happens when it's left out."
          },
          {
            "rule": "TC16",
            "severity": "warn",
            "tool": "claidex_capabilities",
            "message": "no readOnlyHint or destructiveHint",
            "fix": "Set readOnlyHint: true if it only reads; otherwise set destructiveHint and idempotentHint."
          },
          {
            "rule": "TC16",
            "severity": "warn",
            "tool": "claidex_claim_risk_matrix",
            "message": "no readOnlyHint or destructiveHint",
            "fix": "Set readOnlyHint: true if it only reads; otherwise set destructiveHint and idempotentHint."
          },
          {
            "rule": "TC16",
            "severity": "warn",
            "tool": "claidex_health_snapshot",
            "message": "no readOnlyHint or destructiveHint",
            "fix": "Set readOnlyHint: true if it only reads; otherwise set destructiveHint and idempotentHint."
          },
          {
            "rule": "TC16",
            "severity": "warn",
            "tool": "claidex_research_prompt",
            "message": "no readOnlyHint or destructiveHint",
            "fix": "Set readOnlyHint: true if it only reads; otherwise set destructiveHint and idempotentHint."
          },
          {
            "rule": "TC16",
            "severity": "warn",
            "tool": "claidex_tool_catalog",
            "message": "no readOnlyHint or destructiveHint",
            "fix": "Set readOnlyHint: true if it only reads; otherwise set destructiveHint and idempotentHint."
          },
          {
            "rule": "TC16",
            "severity": "warn",
            "tool": "consult_specialist_model",
            "message": "no readOnlyHint or destructiveHint",
            "fix": "Set readOnlyHint: true if it only reads; otherwise set destructiveHint and idempotentHint."
          },
          {
            "rule": "TC16",
            "severity": "warn",
            "tool": "fetch",
            "message": "no readOnlyHint or destructiveHint",
            "fix": "Its name starts with \"fetch\"; if it only reads, set readOnlyHint: true so harnesses can run it without asking."
          },
          {
            "rule": "TC16",
            "severity": "warn",
            "tool": "fetch_research_url",
            "message": "no readOnlyHint or destructiveHint",
            "fix": "Its name starts with \"fetch\"; if it only reads, set readOnlyHint: true so harnesses can run it without asking."
          },
          {
            "rule": "TC16",
            "severity": "warn",
            "tool": "get_claim_content",
            "message": "no readOnlyHint or destructiveHint",
            "fix": "Its name starts with \"get\"; if it only reads, set readOnlyHint: true so harnesses can run it without asking."
          },
          {
            "rule": "TC16",
            "severity": "warn",
            "tool": "query_chembl",
            "message": "no readOnlyHint or destructiveHint",
            "fix": "Its name starts with \"query\"; if it only reads, set readOnlyHint: true so harnesses can run it without asking."
          },
          {
            "rule": "TC16",
            "severity": "warn",
            "tool": "query_clinicaltrials",
            "message": "no readOnlyHint or destructiveHint",
            "fix": "Its name starts with \"query\"; if it only reads, set readOnlyHint: true so harnesses can run it without asking."
          },
          {
            "rule": "TC16",
            "severity": "warn",
            "tool": "query_failure_graph",
            "message": "no readOnlyHint or destructiveHint",
            "fix": "Its name starts with \"query\"; if it only reads, set readOnlyHint: true so harnesses can run it without asking."
          },
          {
            "rule": "TC16",
            "severity": "warn",
            "tool": "query_openfda",
            "message": "no readOnlyHint or destructiveHint",
            "fix": "Its name starts with \"query\"; if it only reads, set readOnlyHint: true so harnesses can run it without asking."
          },
          {
            "rule": "TC16",
            "severity": "warn",
            "tool": "query_opentargets",
            "message": "no readOnlyHint or destructiveHint",
            "fix": "Its name starts with \"query\"; if it only reads, set readOnlyHint: true so harnesses can run it without asking."
          },
          {
            "rule": "TC16",
            "severity": "warn",
            "tool": "query_package_registry",
            "message": "no readOnlyHint or destructiveHint",
            "fix": "Its name starts with \"query\"; if it only reads, set readOnlyHint: true so harnesses can run it without asking."
          },
          {
            "rule": "TC16",
            "severity": "warn",
            "tool": "rank_documents_by_embedding",
            "message": "no readOnlyHint or destructiveHint",
            "fix": "Set readOnlyHint: true if it only reads; otherwise set destructiveHint and idempotentHint."
          },
          {
            "rule": "TC16",
            "severity": "warn",
            "tool": "rerank_documents",
            "message": "no readOnlyHint or destructiveHint",
            "fix": "Set readOnlyHint: true if it only reads; otherwise set destructiveHint and idempotentHint."
          },
          {
            "rule": "TC16",
            "severity": "warn",
            "tool": "run_computation",
            "message": "no readOnlyHint or destructiveHint",
            "fix": "Set readOnlyHint: true if it only reads; otherwise set destructiveHint and idempotentHint."
          },
          {
            "rule": "TC16",
            "severity": "warn",
            "tool": "run_statistical_analysis",
            "message": "no readOnlyHint or destructiveHint",
            "fix": "Set readOnlyHint: true if it only reads; otherwise set destructiveHint and idempotentHint."
          },
          {
            "rule": "TC16",
            "severity": "warn",
            "tool": "search",
            "message": "no readOnlyHint or destructiveHint",
            "fix": "Its name starts with \"search\"; if it only reads, set readOnlyHint: true so harnesses can run it without asking."
          },
          {
            "rule": "TC16",
            "severity": "warn",
            "tool": "search_claims",
            "message": "no readOnlyHint or destructiveHint",
            "fix": "Its name starts with \"search\"; if it only reads, set readOnlyHint: true so harnesses can run it without asking."
          },
          {
            "rule": "TC16",
            "severity": "warn",
            "tool": "search_preprint_flags",
            "message": "no readOnlyHint or destructiveHint",
            "fix": "Its name starts with \"search\"; if it only reads, set readOnlyHint: true so harnesses can run it without asking."
          },
          {
            "rule": "TC16",
            "severity": "warn",
            "tool": "search_pubmed",
            "message": "no readOnlyHint or destructiveHint",
            "fix": "Its name starts with \"search\"; if it only reads, set readOnlyHint: true so harnesses can run it without asking."
          },
          {
            "rule": "TC16",
            "severity": "warn",
            "tool": "web_search",
            "message": "no readOnlyHint or destructiveHint",
            "fix": "Its name starts with \"search\"; if it only reads, set readOnlyHint: true so harnesses can run it without asking."
          },
          {
            "rule": "TC24",
            "severity": "note",
            "message": "24 of 24 tools have no outputSchema",
            "fix": "Declare outputSchema for tools that return structured data, and return structuredContent that matches it."
          }
        ]
      },
      "checkedAt": "2026-10-04T22:22:22Z",
      "count": 24,
      "note": "answered without the initialize handshake",
      "schemaTokens": 4095,
      "status": "ok",
      "tools": [
        {
          "name": "claidex_capabilities",
          "title": "Claidex MCP Capabilities",
          "description": "Return the Claidex MCP feature map, configured storage/model providers, safety controls, resources, prompts, and tool counts.",
          "inputSchema": {
            "$schema": "https://json-schema.org/draft/2020-12/schema",
            "additionalProperties": false,
            "properties": {},
            "type": "object"
          }
        },
        {
          "name": "claidex_claim_risk_matrix",
          "title": "Claidex Claim Risk Matrix",
          "description": "Search claims and summarize MRS bands, trial phases, failure archetypes, and high-risk programs for rapid diligence.",
          "inputSchema": {
            "$schema": "https://json-schema.org/draft/2020-12/schema",
            "additionalProperties": false,
            "properties": {
              "limit": {
                "default": 10,
                "maximum": 20,
                "minimum": 1,
                "type": "integer"
              },
              "query": {
                "description": "Drug, target, disease, sponsor, or failure archetype.",
                "minLength": 1,
                "type": "string"
              }
            },
            "required": [
              "query",
              "limit"
            ],
            "type": "object"
          }
        },
        {
          "name": "claidex_health_snapshot",
          "title": "Claidex Health Snapshot",
          "description": "Return Sentinel metrics, coverage, graph counts, recent automation runs, MRS bands, and preprint-watch summaries.",
          "inputSchema": {
            "$schema": "https://json-schema.org/draft/2020-12/schema",
            "additionalProperties": false,
            "properties": {},
            "type": "object"
          }
        },
        {
          "name": "claidex_research_prompt",
          "title": "Claidex Research Prompt",
          "description": "Compose a rigorous, reusable investigation prompt that tells an MCP client which Claidex tools and resources to use.",
          "inputSchema": {
            "$schema": "https://json-schema.org/draft/2020-12/schema",
            "additionalProperties": false,
            "properties": {
              "disease": {
                "description": "Optional disease area.",
                "type": "string"
              },
              "objective": {
                "description": "The investigation objective to turn into a reusable MCP prompt.",
                "minLength": 1,
                "type": "string"
              },
              "risk_tolerance": {
                "default": "medium",
                "enum": [
                  "low",
                  "medium",
                  "high"
                ],
                "type": "string"
              },
              "target_gene": {
                "description": "Optional HGNC target symbol.",
                "type": "string"
              }
            },
            "required": [
              "objective",
              "risk_tolerance"
            ],
            "type": "object"
          }
        },
        {
          "name": "claidex_tool_catalog",
          "title": "Claidex Tool Catalog",
          "description": "Return the complete MCP tool catalog, optionally including full input schemas and filtering native versus agent-backed tools.",
          "inputSchema": {
            "$schema": "https://json-schema.org/draft/2020-12/schema",
            "additionalProperties": false,
            "properties": {
              "include_schemas": {
                "default": false,
                "description": "Include full JSON Schemas in the catalog.",
                "type": "boolean"
              },
              "source": {
                "default": "all",
                "enum": [
                  "all",
                  "claidex-agent",
                  "mcp-native"
                ],
                "type": "string"
              }
            },
            "required": [
              "include_schemas",
              "source"
            ],
            "type": "object"
          }
        },
        {
          "name": "consult_specialist_model",
          "title": "Consult Specialist Model",
          "description": "Ask a specialist Gateway model for code, database/tool-calling, statistics, literature, preprint, or mechanistic synthesis support. Use for hard subproblems, second opinions, code generation/review, or complex synthesis.",
          "inputSchema": {
            "$schema": "https://json-schema.org/draft/2020-12/schema",
            "additionalProperties": false,
            "properties": {
              "context": {
                "description": "Relevant context, snippets, or data. Do not include secrets.",
                "maxLength": 10000,
                "type": "string"
              },
              "prompt": {
                "description": "Focused task for the specialist model.",
                "maxLength": 6000,
                "minLength": 1,
                "type": "string"
              },
              "task_type": {
                "description": "Specialist routing target.",
                "enum": [
                  "code",
                  "database",
                  "reasoning",
                  "statistics",
                  "research",
                  "literature",
                  "synthesis",
                  "preprint",
                  "general"
                ],
                "type": "string"
              }
            },
            "required": [
              "task_type",
              "prompt"
            ],
            "type": "object"
          }
        },
        {
          "name": "fetch",
          "title": "Fetch Claidex Result",
          "description": "Fetch a specific result returned by search. This compatibility tool supports OpenAI and ChatGPT remote MCP retrieval flows.",
          "inputSchema": {
            "$schema": "https://json-schema.org/draft/2020-12/schema",
            "additionalProperties": false,
            "properties": {
              "id": {
                "description": "Result id returned by the search tool.",
                "minLength": 1,
                "type": "string"
              }
            },
            "required": [
              "id"
            ],
            "type": "object"
          }
        },
        {
          "name": "fetch_research_url",
          "title": "Fetch Research Url",
          "description": "Fetch a public HTTPS research URL, JSON API response, package metadata endpoint, documentation page, or dataset preview. Blocks private/internal hosts and truncates large responses.",
          "inputSchema": {
            "$schema": "https://json-schema.org/draft/2020-12/schema",
            "additionalProperties": false,
            "properties": {
              "max_chars": {
                "default": 8000,
                "maximum": 20000,
                "minimum": 500,
                "type": "number"
              },
              "url": {
                "description": "Public HTTPS URL to fetch.",
                "format": "uri",
                "type": "string"
              }
            },
            "required": [
              "url",
              "max_chars"
            ],
            "type": "object"
          }
        },
        {
          "name": "get_claim_content",
          "title": "Get Claim Content",
          "description": "Retrieve the complete text content of a specific Claidex Claim by its slug. Use this when you need to read the full post-mortem analysis, including hypothesis, failure mechanism, and prevention analysis.",
          "inputSchema": {
            "$schema": "https://json-schema.org/draft/2020-12/schema",
            "additionalProperties": false,
            "properties": {
              "slug": {
                "description": "The Claidex claim slug, e.g. exicorilant-mcrpc-gr-bypass-fourth-failure",
                "minLength": 1,
                "type": "string"
              }
            },
            "required": [
              "slug"
            ],
            "type": "object"
          }
        },
        {
          "name": "query_chembl",
          "title": "Query Chembl",
          "description": "Look up a drug or compound in ChEMBL. Returns mechanism of action, primary target, ChEMBL ID, max development phase, molecular type, and synonyms.",
          "inputSchema": {
            "$schema": "https://json-schema.org/draft/2020-12/schema",
            "additionalProperties": false,
            "properties": {
              "drug_name": {
                "description": "Drug or compound name",
                "minLength": 1,
                "type": "string"
              }
            },
            "required": [
              "drug_name"
            ],
            "type": "object"
          }
        },
        {
          "name": "query_clinicaltrials",
          "title": "Query Clinicaltrials",
          "description": "Search ClinicalTrials.gov for clinical trials. Can search by drug name, condition, target, or NCT ID. Returns trial status, phase, sponsor, primary endpoints, and why_stopped if terminated.",
          "inputSchema": {
            "$schema": "https://json-schema.org/draft/2020-12/schema",
            "additionalProperties": false,
            "properties": {
              "max_results": {
                "default": 5,
                "maximum": 10,
                "minimum": 1,
                "type": "number"
              },
              "phase": {
                "default": "any",
                "enum": [
                  "PHASE1",
                  "PHASE2",
                  "PHASE3",
                  "PHASE4",
                  "any"
                ],
                "type": "string"
              },
              "query": {
                "description": "Search term: drug name, condition, NCT ID, or target",
                "minLength": 1,
                "type": "string"
              },
              "status": {
                "default": "any",
                "enum": [
                  "RECRUITING",
                  "ACTIVE_NOT_RECRUITING",
                  "TERMINATED",
                  "WITHDRAWN",
                  "COMPLETED",
                  "any"
                ],
                "type": "string"
              }
            },
            "required": [
              "query",
              "status",
              "phase",
              "max_results"
            ],
            "type": "object"
          }
        },
        {
          "name": "query_failure_graph",
          "title": "Query Failure Graph",
          "description": "Query the Claidex failure graph for a specific gene target. Returns the Mechanism Risk Score (MRS), failure counts by phase and archetype, and all related claim slugs.",
          "inputSchema": {
            "$schema": "https://json-schema.org/draft/2020-12/schema",
            "additionalProperties": false,
            "properties": {
              "target_gene": {
                "description": "HGNC gene symbol, e.g. PIK3CA, KRAS, EGFR",
                "minLength": 1,
                "type": "string"
              }
            },
            "required": [
              "target_gene"
            ],
            "type": "object"
          }
        },
        {
          "name": "query_openfda",
          "title": "Query Openfda",
          "description": "Query the FDA FAERS database for adverse event signals for a drug. Returns top adverse event terms, serious case count, and death count.",
          "inputSchema": {
            "$schema": "https://json-schema.org/draft/2020-12/schema",
            "additionalProperties": false,
            "properties": {
              "drug_name": {
                "description": "Drug name as it appears in FAERS",
                "minLength": 1,
                "type": "string"
              },
              "max_results": {
                "default": 10,
                "maximum": 20,
                "minimum": 1,
                "type": "number"
              }
            },
            "required": [
              "drug_name",
              "max_results"
            ],
            "type": "object"
          }
        },
        {
          "name": "query_opentargets",
          "title": "Query Opentargets",
          "description": "Query Open Targets for target-disease association evidence. Returns genetic evidence score, clinical evidence, known drugs, tractability, and safety liabilities for a gene-disease pair.",
          "inputSchema": {
            "$schema": "https://json-schema.org/draft/2020-12/schema",
            "additionalProperties": false,
            "properties": {
              "disease_term": {
                "description": "Disease name or EFO term",
                "minLength": 1,
                "type": "string"
              },
              "target_gene": {
                "description": "HGNC gene symbol",
                "minLength": 1,
                "type": "string"
              }
            },
            "required": [
              "target_gene",
              "disease_term"
            ],
            "type": "object"
          }
        },
        {
          "name": "query_package_registry",
          "title": "Query Package Registry",
          "description": "Look up package metadata from npm or PyPI before recommending code, analysis packages, API clients, or dataset tooling.",
          "inputSchema": {
            "$schema": "https://json-schema.org/draft/2020-12/schema",
            "additionalProperties": false,
            "properties": {
              "ecosystem": {
                "description": "Package registry to query.",
                "enum": [
                  "npm",
                  "pypi"
                ],
                "type": "string"
              },
              "package_name": {
                "description": "Package name.",
                "maxLength": 120,
                "minLength": 1,
                "type": "string"
              }
            },
            "required": [
              "ecosystem",
              "package_name"
            ],
            "type": "object"
          }
        },
        {
          "name": "rank_documents_by_embedding",
          "title": "Rank Documents By Embedding",
          "description": "Embed a query and candidate documents, then rank documents by cosine similarity. Use for semantic matching, retrieval checks, clustering triage, and lightweight RAG over user-provided passages.",
          "inputSchema": {
            "$schema": "https://json-schema.org/draft/2020-12/schema",
            "additionalProperties": false,
            "properties": {
              "documents": {
                "items": {
                  "maxLength": 8000,
                  "minLength": 1,
                  "type": "string"
                },
                "maxItems": 30,
                "minItems": 1,
                "type": "array"
              },
              "query": {
                "maxLength": 4000,
                "minLength": 1,
                "type": "string"
              },
              "top_k": {
                "default": 10,
                "maximum": 20,
                "minimum": 1,
                "type": "number"
              }
            },
            "required": [
              "query",
              "documents",
              "top_k"
            ],
            "type": "object"
          }
        },
        {
          "name": "rerank_documents",
          "title": "Rerank Documents",
          "description": "Rerank candidate documents/passages against a query using a dedicated reranking model. Use after retrieval/search when exact relevance ordering matters.",
          "inputSchema": {
            "$schema": "https://json-schema.org/draft/2020-12/schema",
            "additionalProperties": false,
            "properties": {
              "documents": {
                "items": {
                  "maxLength": 8000,
                  "minLength": 1,
                  "type": "string"
                },
                "maxItems": 50,
                "minItems": 1,
                "type": "array"
              },
              "query": {
                "maxLength": 4000,
                "minLength": 1,
                "type": "string"
              },
              "top_n": {
                "default": 10,
                "maximum": 20,
                "minimum": 1,
                "type": "number"
              }
            },
            "required": [
              "query",
              "documents",
              "top_n"
            ],
            "type": "object"
          }
        },
        {
          "name": "run_computation",
          "title": "Run Computation",
          "description": "Evaluate deterministic mathematical expressions with optional variables. Use for algebra, matrices, vectors, transformations, descriptive numerical checks, and reproducible calculations. Does not execute arbitrary JavaScript or install packages.",
          "inputSchema": {
            "$schema": "https://json-schema.org/draft/2020-12/schema",
            "additionalProperties": false,
            "properties": {
              "expression": {
                "description": "MathJS expression, e.g. mean(values), std(values), multiply(A, b), inv(A).",
                "maxLength": 4000,
                "minLength": 1,
                "type": "string"
              },
              "variables": {
                "additionalProperties": {
                  "anyOf": [
                    {
                      "type": "number"
                    },
                    {
                      "type": "string"
                    },
                    {
                      "items": {
                        "type": "number"
                      },
                      "type": "array"
                    },
                    {
                      "items": {
                        "items": {
                          "type": "number"
                        },
                        "type": "array"
                      },
                      "type": "array"
                    }
                  ]
                },
                "default": {},
                "description": "Variables available to the expression. Values must be numbers, strings, vectors, or matrices.",
                "propertyNames": {
                  "type": "string"
                },
                "type": "object"
              }
            },
            "required": [
              "expression",
              "variables"
            ],
            "type": "object"
          }
        },
        {
          "name": "run_statistical_analysis",
          "title": "Run Statistical Analysis",
          "description": "Run a statistical analysis computation. Supports: Wilson confidence intervals, binomial proportions, phase transition success rates, power calculations, Bayesian posterior estimates, descriptive statistics, and two-proportion comparisons. Returns computed values, interpretation, and LaTeX formula.",
          "inputSchema": {
            "$schema": "https://json-schema.org/draft/2020-12/schema",
            "additionalProperties": false,
            "properties": {
              "analysis_type": {
                "enum": [
                  "wilson_ci",
                  "phase_transition_rate",
                  "power_calculation",
                  "bayesian_posterior",
                  "descriptive_stats",
                  "failure_rate_comparison"
                ],
                "type": "string"
              },
              "context": {
                "description": "Optional context about what this analysis is for",
                "type": "string"
              },
              "inputs": {
                "additionalProperties": {
                  "anyOf": [
                    {
                      "type": "number"
                    },
                    {
                      "type": "string"
                    },
                    {
                      "items": {
                        "type": "number"
                      },
                      "type": "array"
                    }
                  ]
                },
                "description": "Named input parameters. wilson_ci: {successes, n, confidence}. phase_transition_rate: {phase, indication, n_succeeded, n_total}. power_calculation: {n, effect_size, alpha}. bayesian_posterior: {prior_success_rate, n_observed, n_success, prior_strength?}. descriptive_stats: {values: number[]}. failure_rate_comparison: {a_success, a_n, b_success, b_n}.",
                "propertyNames": {
                  "type": "string"
                },
                "type": "object"
              }
            },
            "required": [
              "analysis_type",
              "inputs"
            ],
            "type": "object"
          }
        },
        {
          "name": "search",
          "title": "Search Claidex",
          "description": "Search Claidex failure claims and preprint flags. This compatibility tool returns citation-ready results for OpenAI and ChatGPT remote MCP flows.",
          "inputSchema": {
            "$schema": "https://json-schema.org/draft/2020-12/schema",
            "additionalProperties": false,
            "properties": {
              "limit": {
                "default": 8,
                "maximum": 10,
                "minimum": 1,
                "type": "integer"
              },
              "query": {
                "description": "Biomedical failure intelligence query.",
                "minLength": 1,
                "type": "string"
              }
            },
            "required": [
              "query",
              "limit"
            ],
            "type": "object"
          }
        },
        {
          "name": "search_claims",
          "title": "Search Claims",
          "description": "Search the Claidex failure database for post-mortems matching a drug name, gene target, disease, failure archetype, or sponsor. Returns matching claims with title, slug, drug, target, disease, phase, failure archetype, Open Targets score, and MRS score.",
          "inputSchema": {
            "$schema": "https://json-schema.org/draft/2020-12/schema",
            "additionalProperties": false,
            "properties": {
              "category": {
                "default": "any",
                "enum": [
                  "Oncology",
                  "Cardiology",
                  "Neurology",
                  "Immunology",
                  "Infectious Disease",
                  "Metabolic",
                  "Rare Disease",
                  "Other",
                  "any"
                ],
                "type": "string"
              },
              "failure_archetype": {
                "default": "any",
                "enum": [
                  "efficacy_failure",
                  "safety_signal",
                  "enrollment_collapse",
                  "sponsor_decision",
                  "strategic_reprioritization",
                  "translational_mismatch",
                  "biomarker_failure",
                  "any"
                ],
                "type": "string"
              },
              "limit": {
                "default": 10,
                "maximum": 20,
                "minimum": 1,
                "type": "number"
              },
              "query": {
                "description": "Search term: drug name, gene symbol, disease, or failure archetype",
                "minLength": 1,
                "type": "string"
              }
            },
            "required": [
              "query",
              "category",
              "failure_archetype",
              "limit"
            ],
            "type": "object"
          }
        },
        {
          "name": "search_preprint_flags",
          "title": "Search Preprint Flags",
          "description": "Search the Claidex Preprint Watch database for bioRxiv preprints flagged as contradicting the clinical failure record. Search by target gene, disease, or preprint title.",
          "inputSchema": {
            "$schema": "https://json-schema.org/draft/2020-12/schema",
            "additionalProperties": false,
            "properties": {
              "query": {
                "description": "Search term: gene symbol, disease, or preprint title fragment",
                "minLength": 1,
                "type": "string"
              },
              "severity": {
                "default": "any",
                "enum": [
                  "STRONG",
                  "MODERATE",
                  "MILD",
                  "any"
                ],
                "type": "string"
              }
            },
            "required": [
              "query",
              "severity"
            ],
            "type": "object"
          }
        },
        {
          "name": "search_pubmed",
          "title": "Search Pubmed",
          "description": "Search PubMed for biomedical literature. Returns title, authors, journal, year, DOI, abstract, and PMID for each result.",
          "inputSchema": {
            "$schema": "https://json-schema.org/draft/2020-12/schema",
            "additionalProperties": false,
            "properties": {
              "max_results": {
                "default": 5,
                "maximum": 10,
                "minimum": 1,
                "type": "number"
              },
              "query": {
                "description": "PubMed search query",
                "minLength": 1,
                "type": "string"
              }
            },
            "required": [
              "query",
              "max_results"
            ],
            "type": "object"
          }
        },
        {
          "name": "web_search",
          "title": "Web Search",
          "description": "Search the web for recent news, investor commentary, analyst notes, press releases, and conference coverage about drugs, clinical trials, or biomedical mechanisms.",
          "inputSchema": {
            "$schema": "https://json-schema.org/draft/2020-12/schema",
            "additionalProperties": false,
            "properties": {
              "focus": {
                "default": "any",
                "enum": [
                  "news",
                  "academic",
                  "investor",
                  "any"
                ],
                "type": "string"
              },
              "query": {
                "description": "Search query",
                "minLength": 1,
                "type": "string"
              }
            },
            "required": [
              "query",
              "focus"
            ],
            "type": "object"
          }
        }
      ]
    },
    "name": "Claidex MCP",
    "note": "Indexed from the official MCP registry: facts and our own checks, not reviewed, so no score, grade or rank.",
    "packages": [
      {
        "registryType": "npm",
        "identifier": "@claidex-mcp/claidex-mcp",
        "version": "1.0.0",
        "transport": "stdio"
      }
    ],
    "pageJsonUrl": "https://www.anchorterminal.com/tools/claidex-failure-intelligence.json",
    "popularity": {
      "npmWeekly": 16
    },
    "registryName": "com.claidex/failure-intelligence",
    "remotes": [
      {
        "type": "streamable-http",
        "url": "https://app.claidex.com/api/mcp"
      }
    ],
    "repository": "https://github.com/ssatanis/claidex-sentinel",
    "reviewed": false,
    "slug": "claidex-failure-intelligence",
    "source": "the official MCP registry",
    "sourceUrl": "https://registry.modelcontextprotocol.io/v0.1/servers?search=com.claidex/failure-intelligence",
    "summary": "Biomedical failure intelligence platform for terminated trials and translational analysis.",
    "updatedAt": "2026-05-24T20:01:49Z",
    "url": "https://www.anchorterminal.com/tools/claidex-failure-intelligence",
    "vendor": "claidex.com",
    "vendorUrl": "https://claidex.com",
    "version": "1.0.0",
    "websiteUrl": "https://claidex.com",
    "where": "both",
    "why": [
      "vendor"
    ]
  }
}